Secondary Structure of This Toxin is Analyzed by Different Analysis Tool on Biology Workbench
CHOFAS (Chou-Fasman plot) Results

Predict secondary protein structure of Snake's Toxin . 

 60 aa
                .         .         .         .         .         .
       LKCNKLVPLFYKTCPAGKNICYKMFMVATPKLPVKRGCIDVCPKSSLLVRYVCCNTDKCN
 helix <--------->        <------------->       <-------->         
 sheet     EEEEEEEEE      EEEEEEEEE         EEEE     EEEEEEEEE     
 turns                  T           T     T       TT               

       
       
 helix 
 sheet 
 turns 

 Residue totals: H: 36   E: 31   T:  5
        percent: H: 60.0 E: 51.7 T:  8.3
GARNIER Results

Predict secondary structure of Snake's Toxin

 60 aa; DCH = 0, DCS = 0
 
           .   10    .   20    .   30    .   40    .   50    .   60
       LKCNKLVPLFYKTCPAGKNICYKMFMVATPKLPVKRGCIDVCPKSSLLVRYVCCNTDKCN
 helix H                         HHHH                              
 sheet     EEEEEEEEE      EEEEEEE           EEEEE    EEEEEEE       
 turns  TTT          TTTTT           T TTTTT     TTTT       TTTTTTT
 coil               C                 C                            

       
       
 helix 
 sheet 
 turns 
 coil  

 Residue totals: H:  5   E: 28   T: 25   C:  2
        percent: H: 11.4 E: 63.6 T: 56.8 C:  4.5
GOR4 Results

Predict secondary structure of Snake's Toxin 


LKCNKLVPLF YKTCPAGKNI CYKMFMVATP KLPVKRGCID VCPKSSLLVR      Sequence
CCCCCCCCEE EEECCCCCCE EEEEEEECCC CCCCCCCEEC CCCCCCEEEE      Predicted Sec. Struct.
YVCCNTDKCN                                                  Sequence
EEECCCCCCC                                                  Predicted Sec. Struct.
LEGEND:

 Alpha Helix = H  Beta Sheet = E  Random Coil = C
NCSA Computational Biology - MPSSP Results

Protein Secondary Structure Prediction of snake's trotein 

        10        20        30        40        50        60
....:....x....:....x....:....x....:....x....:....x....:....x
CCCCCEEEEEECCCCCCCCCCEECCCECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC     BPS
CHHHHCEEEEECCCCCCCHEECCCEEECCCCCCCCCCCEEECCCCEEEEEEEEECCCCCC     GAS
HHHCCCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC     GOR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC     H_K
CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC     Q_S
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC     JOI

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