The Leucine Zippers & Comparison of Coiled-Coil Types

Table 2.Comparison of coiled-coil types
Ferritin-type Alacoil ROP-type Alacoil Classic coiled-coil

Helix directions Antiparallel Antiparallel Parallel
Helix-axis spacing 7.5 A 8.5 A 9.6 A
Fraction offset/heptad 0.2-0.25(offset) 0.4-0.5("aligned")* 0(aligned)
Main contact site Ala in "a" Ala in "d" Leu in "d"
Contact layer(s) Layers same:a-d Layers same: d-a Layers same: d-d, a-a
Contact side(s) Sides different: tip versus knuckle Sides different: tip versus knuckle Sides same
Hole opposite knob Triangle up: i-3, i, i+1 Triangle down: i,i+1, i+4 Diamond: i-3, i, i+1, i+4
Occurrence as long coil in five unrelated globular or membrane proteins In two unrelated globular proteins Leu zip dimers;fibrous proteins

*Detailed parameters for the classic coiled-coil are taken from the GCN4 leucine zipper structure
*Helix turns are aligned, although two-turn heptad repeat is offset by 0.5
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