phylogenetic

Version 3.0

CLUSTAL_W
Phylogenetic Analysis with Clustalw

Selected Sequence(s)

HMG BOX,
O.aries SRY gene (partial).,
C.hircus SRY gene (partial).,
B.taurus SRY gene (partial).,
Homo sapiens mRNA for hTCF-4.,
Homo sapiens mRNA for HMGBCG protein.,
putative,
Human TCF-1 mRNA for T cell factor 1 (splice form C).,
Human TCF-1 mRNA for T cell factor 1 (splice form B).,
Human TCF-1 mRNA for T cell factor 1 (splice form A).,
M.musculus HMG1-R-227 gene.

Sequence Information

Sequence 1: HMG BOX - Seq1	603 aa
Sequence 2: partial - Seq2	603 aa
Sequence 3: partial - Seq3	603 aa
Sequence 4: partial - Seq4	603 aa
Sequence 5: Homo sapiens mR - Seq5	603 aa
Sequence 6: Homo sapiens mR - Seq6	603 aa
Sequence 7: putative - Seq7	603 aa
Sequence 8: splice form C - Seq8	603 aa
Sequence 9: splice form B - Seq9	603 aa
Sequence 10: splice form A - Seq10	603 aa
Sequence 11: M.musculus HMG1 - Seq11	603 aa

PHYLIP rooted tree -Phenogram

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PHYLIP unrooted tree

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Citation

Algorithm Citation:

Higgins, D.G., Bleasby, A.J. and Fuchs, R. (1992) CLUSTAL V: improved software for multiple sequence alignment. Computer Applications in the Biosciences (CABIOS), 8(2):189-191.

Thompson J.D., Higgins D.G., Gibson T.J. "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice." Nucleic Acids Res. 22:4673-4680(1994).

Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
Program Citation:
CLUSTAL W: Julie D. Thompson, Desmond G. Higgins and Toby J. Gibson, modified; any errors are due to the modifications.

PHYLIP: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.