Homework #5


Answer #1:

1. emb|X62395|NTLTP1
N.tabacum ltp1 gene for lipid transferase
Length = 3112

Plus Strand HSPs:

Score = 2976 (822.3 bits), Expect = 1.1e-242, Sum P(2) = 1.1e-242
Identities = 598/605 (98%), Positives = 598/605 (98%), Strand = Plus / Plus

Query: 1 AATTAATTCTCTCAATCAAATCCAATTTTCTCCCTATAAAAACCCTAAGGTCCTATAGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 AATTAATTCTCTCAATCAAATCCAATTTTCTCCCTATAAAAACCCTAAGGTCCTATAGTG 1237

Query: 61 TTCTATATCCAACACTAGCTCCTACTCCCTAAAGCATTTATTATATCTTCCCCTAGCTAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 TTCTATATCCAACACTAGCTCCTACTCCCTAAAGCATTTATTATATCTTCCCCTAGCTAG 1297

Query: 121 ATACTTCATTCCACAAATAGTTTGCAGCTTTTTCTTTTCCTCTAAAACAATGGAAATAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ATACTTCATTCCACAAATAGTTTGCAGCTTTTTCTTTTCCTCTAAAACAATGGAAATAGC 1357

Query: 181 TGGGAAAATTGCATGCTTTGTGGTATTGTGCATGGTGGTAGCTGCACCCTGCGCAGAAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 TGGGAAAATTGCATGCTTTGTGGTATTGTGCATGGTGGTAGCTGCACCCTGCGCAGAAGC 1417

Query: 241 CATAACCTGTGGCCAGGTTACGTCGAATTTGGCACCTTGTCTTGCTTATCTTAGAAACAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 CATAACCTGTGGCCAGGTTACGTCGAATTTGGCACCTTGTCTTGCTTATCTTAGAAACAC 1477

Query: 301 GGGGCCTCTGGGACGTTGTTGCGGTGGCGTTAAGGCTCTGGTGAATTCTGCAAGGACCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 GGGGCCTCTGGGACGTTGTTGCGGTGGCGTTAAGGCTCTGGTGAATTCTGCAAGGACCAC 1537

Query: 361 AGAAGATCGTCAAATTGCATGCACTTGCCTGAAATCAGCTGCAGGTGCTATTTCTGGAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 AGAAGATCGTCAAATTGCATGCACTTGCCTGAAATCAGCTGCAGGTGCTATTTCTGGAAT 1597

Query: 421 CAATTTGGGCAAAGCTGCTGGTCTCCCTAGTACTTGTGGTGTCAATATTCCTTACAAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1598 CAATTTGGGCAAAGCTGCTGGTCTCCCTAGTACTTGTGGTGTCAATATTCCTTACAAGAT 1657

Query: 481 CAGCCCTTCCACTGACTGCTCCAAGTACCTCACNNNNNNNCTCTCTCATGCTATTCTTAT 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1658 CAGCCCTTCCACTGACTGCTCCAAGTACCTCACTTTTTTTCTCTCTCATGCTATTCTTAT 1717

Query: 541 CCTTATATTCTATCTGCTTCATTTTCGCTTATCTTTTAAATTTTTTATTCGGAATCTTTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 CCTTATATTCTATCTGCTTCATTTTCGCTTATCTTTTAAATTTTTTATTCGGAATCTTTA 1777

Query: 601 TACCA 605
|||||
Sbjct: 1778 TACCA 1782

2. translation="MEIAGKIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNT
GPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPY
KISPSTDCSKVQ"


Answer #2:

1. nucleotides: 743
proteins: 1020

2. 1 tacggctgcg agaagacgac agaaggggac tgcaattaca aatcaaacca
51 aaattgacaa atttcacgca caaaatcaca atatccaaaa atttctcaat
101 actgaaaatg gatttgaggt tgttgggtat cgataacaca ccactcttcc
151 acactctcca ccatatgatg gaagctgccg gtgaagattc cgacaagtct
201 gtcaatgcac catcaaggaa ctatgttcgt gatgctaagg ccatggctgc
251 tacaccagcg gatgtgaagg agtatcctaa ttcgtatgtt tttgttgtgg
301 atatgccagg gttgaaatct ggagatatca aagtgcaggt ggaagaagac
351 aatgtgctgt tgattagtgg tgaaaggaag agggaagaag agaaagaagg
401 tgcaaagttt attaggatgg agagaagggt tgggaaattc atgaggaagt
451 ttagtctgcc agagaatgcg aatactgatg caatttctgc agtttgtcaa
501 gatggagttc tgactgttac tgttcagaaa ttgcctcctc ctgagccaaa
551 gaaacccaaa acaattgagg tgaaagttgc ttgaagttat ggactctgtt
601 ttgatggttt gtggtatgat gtagtagaaa taaagttgta ggagtagtga
651 acttttcctt tcatctttct gctatgtttt cacgtctgtt tgaatgttac
701 aatagccatg ggtattgttt gttttgatgc caaaaaaa