HOMEWORK#6

Rasmol Script

• due on 12/24

Write a rasmol script to show the active site of a protein. Link your script file and the protein used in your HomePage and also show 4 representative GIF pictures.

Script

Image

#!rasmol -script # File: IRK1 # Creator: RasMol Version 2.6 zap background [0,0,0] load pdb "1IRK" set ambient 60 set specular off reset slab off rotate z 40 rotate y -45 rotate x 156 set axes off set boundingbox off set unitcell off set hbond sidechain set bondmode and dots off select all colour white wireframe off cartoon 100 select helices cartoon 200 color red select sheets cartoon off strands 200 color blue select *982,1282 color green define pkd (*1155,1156,1157,1158,1159,1160,1161,1162,1163,1164,1165,1166,1167) define npbd(*1029,1030,1031,1032,1033,1034,1035,1036,1037) select pkd cartoon 200 color yellow select npbd color violet

INSULIN RECEPTOR (tyrosin kinase receptor) view orginal image

PICTURE 2:

Script	Image
select *982,1283 color green select *982.n label %n%r select *1283.oxt label %n%r	INSULIN RECEPTOR (tyrosin kinase receptor) view orginal image

PICTURE 3:

Script	Image
select pkd spacefill 200 select npbd spacefill 200 select *1155.cb color orange label %n%r select *1033.nd2 color cyan label %n%r monitor 405,1346	INSULIN RECEPTOR (tyrosin kinase receptor) view orginal image

PICTURE 4:

Script	Image
rotate y 2 refresh rotate repeat 10 times select pkd spacefill 100 select npbd spacefill 100 rotate y 2 refresh rotate repeat 10 times select pkd spacefill off select npbd spacefill off rotate y 2 refresh rotate repeat 10 times select pkd spacefill 100 select npbd spacefill 100 rotate y 2 refresh rotate repeat 10 times select pkd spacefill 200 select npbd spacefill 200 all repeat 5 times	INSULIN RECEPTOR (tyrosin kinase receptor) view orginal image