Sequence	Fasta label (*)	Workbench label (**)
1	R._norvegicus	Rattus norvegicus mismatch repair protein (MLH1) mRNA, complete,
2	M._musculus	Mus musculus MutL homolog 1 protein (MLH1) mRNA, complete cds.,
3	MLH1_HUMAN	DNA MISMATCH REPAIR PROTEIN MLH1 (MUTL PROTEIN HOMOLOG 1) [Homo sapiens (Human)],
4	D._melanogaster	Drosophila melanogaster genomic scaffold 142000013386047 section 5,
5	S._cerevisiae	Saccharomyces cerevisiae DNA mismatch repair (MLH1) gene, complete,
6	C._elegans	Caenorhabditis elegans cosmid T28A8, complete sequence_

(*) Clustalw cuts off Fasta labels after the first space (e.g. ">abc def" becomes ">abc").

(**) The Workbench labels ONLY are meaningful if they were formed correctly, which means each label corresponds with the sequence IN THE SAME ORDER in the sequence alignment. This will not always be the case, so use this column carefully.

Download a PostScript version of the output

Raw Phylip format tree

(
R._norvegicus:0.04691,
M._musculus:0.03631,
(
MLH1_HUMAN:0.05530,
(
D._melanogaster:0.23744,
(
S._cerevisiae:0.32903,
C._elegans:0.37670)
:0.04784)
:0.19079)
:0.02362);

Clustal W Diagnostic Output

 CLUSTAL W (1.81) Multiple Sequence Alignments



Sequence type explicitly set to Protein
Sequence format is Pearson
Sequence 1: R._norvegicus        814 aa
Sequence 2: M._musculus          814 aa
Sequence 3: MLH1_HUMAN           814 aa
Sequence 4: D._melanogaster      814 aa
Sequence 5: S._cerevisiae        814 aa
Sequence 6: C._elegans           814 aa
Phylogenetic tree file created:   [../tmp-dir/14295.DRAWGRAM.ph]

Citation

Algorithm Citation:

Higgins, D.G., Bleasby, A.J. and Fuchs, R. (1992) CLUSTAL V: improved software for multiple sequence alignment. Computer Applications in the Biosciences (CABIOS), 8(2):189-191.

Thompson J.D., Higgins D.G., Gibson T.J. "CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice." Nucleic Acids Res. 22:4673-4680(1994).

Felsenstein, J. 1989. PHYLIP -- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.

Program Citation:

CLUSTAL W: Julie D. Thompson, Desmond G. Higgins and Toby J. Gibson, modified; any errors are due to the modifications.

PHYLIP: Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.