RPS-BLAST 2.2.1 [Aug-1-2001]

Query= 
         (756 letters)
    .. This CD alignment includes 3D structure. To display structure, download Cn3D v3.00!
  PSSMs producing significant alignments: Score
(bits)		 E
value
 
gnl|Pfam|pfam01119 DNA_mis_repair, DNA mismatch repair protein. Also known as the... 202 7e-53
gnl|Pfam|pfam02518 HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ... 40.8 3e-04
gnl|Smart|smart00387 HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, D... 40.0 5e-04

gnl|Pfam|pfam01119, DNA_mis_repair, DNA mismatch repair protein. Also known as the mutL/hexB/PMS1 family.
query to multiple alignment, display   sequences 
             CD-Length = 179 residues, 100.0% aligned
             Score =  202 bits (513), Expect = 7e-53

Query:  147  GTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRT  206
Sbjct:  1    GTTVEVRDLFYNLPVRRKFLKSPKKEFRKILDLLQRYALIHPNVSFSLTKEGKALLQLKT  60

Query:  207  LPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAFKMNGYISNANYSV-KKCIFLLFINHR  265
Sbjct:  61   SPS-SLKERIRSVFGTAVLKNLIPF--EEKDGDFRIEGFISSPNVSRSSRDRQFLFINGR  117

Query:  266  LVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILER  325
Sbjct:  118  PVEDKLLLKAIREVYATYLPRGRYPVFVLNLELPPELVDVNVHPDKKEVRLLKEEEILDL  177

Query:  326  VQ  327
Sbjct:  178  IK  179
gnl|Pfam|pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase.
query to multiple alignment, display   sequences 
             CD-Length = 112 residues, only  50.9% aligned
             Score = 40.8 bits (94), Expect = 3e-04

Query:  31   AIKEMIENCLDAKSTSIQVIV---KEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSK  84
Sbjct:  9    VLSNLLDNAIKYTPEGGEITVSLERDGDHLEITVEDNGPGIPEEDLERIFEPFFRTD  65
gnl|Smart|smart00387, HATPase_c, Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
query to multiple alignment, display   sequences 
             CD-Length = 112 residues, only  53.6% aligned
             Score = 40.0 bits (92), Expect = 5e-04

Query:  31   AIKEMIENCLDAKSTSIQVIV---KEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQS  87
Sbjct:  9    VLSNLLDNAIKYTPEGGRITVTLEREGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRS  68