1BKNA
Length = 272
Score = 122 bits (303), Expect = 5e-28
Identities = 82/287 (28 Positives = 144/287 (49 Gaps = 30/287 (10
Query: 25 IQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSK
84
RPA KE EN LDA T I GG KLI I DNG GI K L
Sbjct: 1 VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALAL------A 54
Query: 85 LQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLQAPPKPCAG 144
DL I GFRGEALASIS V T T TA A A KP A
Sbjct: 55 IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQA------YAVTVKPAAH 108
Query: 145 NQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVSDV 204
GT V L E I E R G V
Sbjct: 109 PVGTTLEV-------------LDTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQY 155
Query: 205 RTLPNATTVD-NIRSIFGNAVSRELIEVGCEDKTLAFKMNGYISNANYSVKKC--IFLLF 261
R P I G A L G N I
Sbjct: 156 RAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLT--LRGWVADPNHTTPALAEIQYCY 213
Query: 262 INHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVH 308
N R AI L P L LEI P V VH
Sbjct: 214 VNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVSRLVH 260
1BKNB
Length = 271
Score = 118 bits (293), Expect = 8e-27
Identities = 80/282 (28 Positives = 141/282 (49 Gaps = 33/282 (11
Query: 25 IQRPANAIKEMIENCLDAKSTNIQVVVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSK
84
RPA KE EN LDA T I GG KLI I DNG GI K L
Sbjct: 1 VERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALAE----- 55
Query: 85 LQTFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLQAPPKPCAG 144
I GFRGEALASIS V T T TA A A KP A
Sbjct: 56 --------AIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQA-----YMNVTVKPAAH 102
Query: 145 NQGTLITVEDLFYNIITRRKALKNPSEEYGKILEVVGRYSIHNSGISFSVKKQGETVSDV 204
GT V DL L E I E R G V
Sbjct: 103 PVGTTLEVLDL----------LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQY 152
Query: 205 RTLPNATTVD-NIRSIFGNAVSRELIEVGCEDKTLAFKMNGYISNANYSVKKC--IFLLF 261
R P I G A L G N I
Sbjct: 153 RAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLT--LRGWVADPNHTTPALAEIQYCY 210
Query: 262 INHRLVESAALRKAIETVYAAYLPKNTHPFLYLSLEISPQNV 303
N R AI L P L LEI P V
Sbjct: 211 VNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQV 252
Assignment 9
Comparative Protein Modelling by SWISS-MODEL
- To make a protein model by homology modelling
1. Make a protein structure model of MLH1 based on the protein you find in assignment 7. Show their pairwise alignment.Ans :
2. How large is the fragment of MLH1 possible to be modeled?
Ans : residues 3 - 339 of submitted sequence.
3. Show three rasmol pictures of your model of MLH1?
Ans :