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push me to go back!!
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HOMEWORK 6 |
1. Please help him to identify this gene (name, accession #, authors ...... )
Ans: Take a look!
2. Which organism does this gene belong?
Ans: Tetrahymena pyriformis
3. How many nucleotide, protein and structure have been known for this organism?
Ans:
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nucleotide
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95ºØ
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protein
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231ºØ
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structure
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0ºØ
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4. Do the Blast search for this gene. List the top 10 most similar sequence.
Ans:
Sequences producing significant alignments: Score(bits), E-Value
(1)dbj|D13920.1|TETHEMOGP Tetrahymena pyriformis mRNA for hemo... 1148 0.0
(2)dbj|D13919.1|TETHEMOGT Tetrahymena thermophila mRNA for hem... 70 1e-09
(3)emb|AL049870.3|CNS0000S Human chromosome 14 DNA sequence **... 48 0.005
(4)gb|U56081.1|CEU56081 Caenorhabditis elegans T-BOX 12 (Ce-tb... 48 0.005
(5)gb|AF194867.1|AF194867 Portulaca oleracea NADH dehydrogenas... 46 0.019
(6)gb|AF194854.1|AF194854 Portulaca molokiniensis NADH dehydro... 46 0.019
(7)gb|AF194853.1|AF194853 Portulaca grandiflora NADH dehydroge... 46 0.019
(8)emb|AJ235828.1|MBR235828 Mostuea brunonis chloroplast ndhF ... 46 0.019
(9)gb|AF130178.1|AF130178 Montinia caryophyllacea NADH dehydro... 44 0.076
(10_gb|AE003647.1|AE003647 Drosophila melanogaster genomic scaf... 40 1.2
5. Using ORF finder to translate this gene. Show the correct protein sequence.
Ans:
1 mnkpqtiyek lggenamkaa vplfykkvla dervkhffkn tdmdhqtkqq tdfltmllgg
61 pnhykgknmt eahkgmnlqn lhfdaiienl aatlkelgvt davineaakv iehtrkdmlg
121 k