1.利用
translate tool可得:W M P C S G G N M K K S I L F I F L S V L S F S P F A Q D A K P V E S S K E K I T L E SK K C N I A K K S N K S G P E S M N S S N Y C C E L C C N P A C T G C Y Stop Stop Y KG N Stop T V P F I F V L I L M M S V T Y V L L L C Stop I N R2.
用ncbi的blast來查為E.coli的heat stable toxin(st gene)但是score只有85%,再用swiss model submit上去所得到的homology search為sorry………….,因此判斷此為一new protein3.
利用sps可查出positive charge 6個negative有12個4. red:nonpolor a. a.
blue:polar uncharged a.a.
positive:yellow
negative:green
WMP
CSGGNMK KSILFIFLSV LSFSPFAQDA KPVESSKEKIT
LESKKCNIA KKSNKSGPES MNSSNYCCEL CCNPACTGCYY
KGNTVPFIF VLILMMSVTY VLLLCINR5.
.
6.
[1]
PDOC00001 PS00001 ASN_GLYCOSYLATIONN-glycosylation site
Number of matches: 2
1 54-57 NKSG
2 62-65 NSSN
[2]
PDOC00005 PS00005 PKC_PHOSPHO_SITEProtein kinase C phosphorylation site
Number of matches: 3
1 35-37 SSK
2 44-46 SKK
3 53-55 SNK
[3]
PDOC00006 PS00006 CK2_PHOSPHO_SITECasein kinase II phosphorylation site
Number of matches: 2
1 35-38 SSKE
2 56-59 SGPE
[4]
PDOC00246 PS00273 ENTEROTOXIN_H_STABLEHeat-stable enterotoxins signature
67-79 CCELCCNPACTGC
7.利用expasy的"compute pI/MW"可得pI=8.89 mw=11986.23