ORNL GenQuest Server Form

SEARCH CRITERIA

SEQUENCE TYPE: Protein DNA DNA6 (sequence translated in 6 frames)
Filter? (DNA only)

DATABASE: Swissprot PDB Prosite BLOCKS GSDB Repetitive dbEST

METHOD: Smith-Waterman FASTA BLAST (does not apply to Prosite or Blocks)

Smith-Waterman Gap Penalty? (0-100)
Smith-Waterman Alignment? Local or Global

MATRIX: Blosum PAM

For Blosum 62 or 80 ?
For PAM 10*(1-50)

DATABASE HITS:

Scores
Alignments

SEQUENCE

FILE AND DATASET OPERATIONS

[[ Read an Uploaded Sequence ]]

[[ Upload A Sequence ]]